CHAPTER 1 Introduction 1.1 Background 1.2 Bibliography CHAPTER 2 Building an MD simulation program 2.1 Introduction 2.2 Ensembles 2.3 Periodic Boundary Conditions 2.4 Neighbour list 2.5 Potential energy and forces 2.6 The velocity Verlet method 2.7 Simulation algorithm 2.8 Bibliography CHAPTER 3 Sample of an application of an MD simulation...
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