- The Life of Pope Pius IX: And The Great Events in the History of the Church During his Pontificate
- A History of the Catholic Church in the United States
- Narrative of a Captivity among the Mohawk Indians: And a Description of New Netherland in 1642-3 (1856)
- History of the Catholic Church in the United States: From the Earliest Settlement of the Country to the Present Time: With Biographical Sketches, Accounts of Religious Orders, Councils
- Discovery and Exploration of the Mississippi Valley